Protein Tools

Product Overview​

New England Biolabs offers an array of protein tools for all of your protein analysis needs.

Proteome Analysis

Trypsin-digested BSA MS Standard (CAM-modified) (NEB #P8108) is a complex mixture of peptides that can be used to calibrate mass spectrometers.

Proteases

NEB offers several proteases for proteomics applications, including Trypsin (NEB #P8119), AspN (NEB #P8104), GluC (NEB #P8100), Furin (NEB #P8077), and Endoproteinase LysC (NEB #P8109).

Protein Labeling

New England Biolabs provides the SNAP-tag®, CLIP-tag™ and ACP/MCP-tag protein labeling systems that facilitate the attachment of virtually any molecule to a protein of interest, and can be used for studying the function and localization of proteins in living and fixed cells, as well as protein immobilization. 

Phage Display

The Ph.D.™ libraries from New England Biolabs have become the preeminent tools in this field, with hundreds of publications describing applications, including epitope mapping/vaccine development, mapping protein-protein contacts and identification of peptide mimics of non-peptide ligands. Bioactive peptides, which can be used as cell-targeting or gene delivery agents, have been identified either by panning against purified receptors or against intact cells or tissue samples, both in vitro and in vivo. NEB offers displayed peptide libraries of 7 (NEB #E8211S) and 12 (NEB #E8210S) residues, as well as a disulfide-contrained 7-residue library (NEB #E8212S).

Protein Kinases

The reversible addition of phosphate groups to proteins is important for the transmission of signals within eukaryotic cells and, as a result, protein phosphorylation and dephosphorylation regulate many diverse cellular processes. As the number of known protein kinases has increased at an ever-accelerating pace, it has become more challenging to determine which protein kinases interact with which substrates in the cell. The determination of consensus phosphorylation site motifs by amino acid sequence alignment of known substrates has proven useful in this pursuit. These motifs can be helpful for predicting phosphorylation sites for specific protein kinases within a potential protein substrate. NEB offers a line of several protein kinases to aid in this research.

Protein Phosphatases

Protein phosphorylation plays a role in the regulation of the function and activity of protein factors and enzymes. Protein phosphorylation can be found on tyrosine, histidine, serine and threonine residues. Analysis of the presence of such phosphorylation, and its attendant effects, is often aided by removal of the protein phosphate groups by phosphatases. NEB offers several protein phosphatases that remove phosphate groups from different subsets of these residues.

Protein Standards

New England Biolabs offers a selection of highly pure protein standards. Sizes range from 10 to 250 kDa which is ideal for accurate molecular weight determination for a wide range of expressed proteins. We offer a blue prestained protein standard, as well as a colored prestained protein standard with multi-colored bands for easy identification. Standards are provided pre-mixed with loading buffer and reducing agent.

Protein Tools includes these subcategories:

Phage Display
Proteases
Protein Kinases Information
Protein Labeling
Protein Standards
Protein Phosphatases
Proteome Analysis
Protein Tools Buffers & Diluents

FAQs for Protein Tools

  • What is Ph.D.™ Phage Display?
  • What products has NEB developed from ongoing basic research in molecular parasitology?
  • Which residues does Endoproteinase AspN cut?
  • Are there any amino acid residues that inhibit or reduce the efficiency of digestion of glutamate residues in a peptide sequence with Endoproteinase GluC? The site I want to digest has a glutamate residue followed by a proline residue and some enzymes are inhibited by the presence of a proline after the hydrolysis site.
  • How does one do a Trypsin in-gel digest?
  • I can’t get Endoproteinase AspN to digest my protein.
  • I have a very low concentration of protein and would prefer not to denature as a separate step with buffer exchange before digestion. What denaturants can he use in the Trypsin reaction itself?
  • What peptide libraries are available for use with Ph.D.™ Phage Display?
  • What is the Proteinase K activity in commonly used buffers?

Protocols for Protein Tools

  • In-Solution Digestion Using Trypsin-ultra™, Mass Spectrometry Grade (Recombinant) (NEB #P8119)
  • Filtration Assisted Sample Preparation (FASP) Using Trypsin-ultra™, Mass Spectrometry Grade (Recombinant) (NEB #P8119)

Application Notes for Protein Tools

  • Labeling of Escherichia coli Expressed SNAP-tag® Fusion Proteins
  • Ph.D.™ Peptide Display Cloning System
  • Simultaneous Fluorescent Labeling of Proteins in Living Cells
  • Intein-Mediated Protein Ligation IPL and Labeling with the IMPACT™ Kit
  • Comprehensive structural and positional profiling of intact complex O-glycans in biologic drugs using O-Glycoprotease (IMPa)

Tools & Resources

Feature Articles

Combating Neglected Diseases - a genomic approach to identify potential drug targets
Parasitic Infections in Humans
Understand the common types of parasitic infections in humans and why they are still increasing in tropical regions.
Applications of the Ph.D. Phage Display Peptide Libraries

Brochures

Purification Beads, Columns and Resins Brochure
Glycoproteomics Brochure
Glycoproteomics Technical Guide
Glycosylation Poster

Posters

Cold-Active TEV Protease: Engineered for higher performance at low temperatures

Protease Selection Chart

Protease Selection Chart
Protease Selection Chart

Legal Information

Product Listing

New England Biolabs offers proteases, phosphatases, kinases, chitinases and protein markers and ladders, as well as tools for phage display and protein labeling.

Protein Tools

Cold-Active TEV Protease
NEBExpress® Salt Active Nuclease
NEBExpress® Salt Active Nuclease, GMP Grade
O-Glycoprotease (IMPa)
Ph.D.™-7 Phage Display Peptide Library Kit v2
Ph.D.™-C7C Phage Display Peptide Library Kit v2
Ph.D™.-12 Phage Display Peptide Library Kit v2
Proteinase K, Molecular Biology Grade
Thermolabile Proteinase K

Phage Display

M13KO7 Helper Phage
Ph.D.™ Peptide Display Cloning System
Ph.D.™-12 Phage Display Peptide Library
Ph.D.™-7 Phage Display Peptide Library Kit v2
Ph.D.™-C7C Phage Display Peptide Library Kit v2
Ph.D™.-12 Phage Display Peptide Library Kit v2

Proteases

Cold-Active TEV Protease
Endoproteinase AspN
Endoproteinase GluC
Endoproteinase LysC
Enterokinase, light chain
Factor Xa Protease
Furin
IdeZ Protease (IgG-specific)
O-Glycoprotease (IMPa)
TEV Protease
Trypsin-ultra™, Mass Spectrometry Grade
Trypsin-ultra™, Mass Spectrometry Grade (Recombinant)
α-Lytic Protease

Protein Kinases

cAMP-dependent Protein Kinase (PKA), catalytic subunit
Casein Kinase II (CK2)
Sodium Orthovanadate (Vanadate)

Protein Labeling

Anti-SNAP-tag® Antibody (Polyclonal)
BG-GLA-NHS
BG-Maleimide
BG-PEG-NH2
CLIP-Biotin
CLIP-Cell™ 505
CLIP-Cell™ TMR-Star
CLIP-Surface™ 488
CLIP-Surface™ 547
CLIP-Surface™ 647
IMPACT™ Kit
pCLIPf Vector
pSNAPf Vector
pSNAP-tag® (T7)-2 Vector
SNAP-Biotin®
SNAP-Capture Magnetic Beads
SNAP-Cell® 505-Star
SNAP-Cell® Block
SNAP-Cell® Oregon Green®
SNAP-Cell® TMR-Star
SNAP-Cell® 430
SNAP-Cell® 647-SiR
SNAP-Surface® 488
SNAP-Surface® 549
SNAP-Surface® 594
SNAP-Surface® 649
SNAP-Surface® Alexa Fluor® 488
SNAP-Surface® Alexa Fluor® 546
SNAP-Surface® Alexa Fluor® 647
SNAP-Surface® Block
SNAP-tag® Purified Protein

Protein Standards

Blue Prestained Protein Standard, Broad Range (11-250 kDa)
Blue Protein Loading Dye
Color Prestained Protein Standard, Broad Range (10-250 kDa)
Unstained Protein Standard, Broad Range (10-200 kDa)

Protein Phosphatases

Lambda Protein Phosphatase (Lambda PP)
p-Nitrophenyl Phosphate (PNPP)
Sodium Orthovanadate (Vanadate)

Proteome Analysis

Endo D
Endo F3
Endo H
Endo Hf
Endo S
Endoproteinase AspN
Endoproteinase GluC
Endoproteinase LysC
IdeZ Protease (IgG-specific)
N-Glycopeptide Binding Protein
O-Glycoprotease (IMPa)
O-Glycosidase
PNGase A
PNGase F
PNGase F (Glycerol-free)
PNGase F (Glycerol-free), Recombinant
PNGase F, Recombinant
Protein Deglycosylation Mix II
Rapid™ PNGase F
Rapid™ PNGase F (non-reducing format)
Remove-iT® PNGase F
RNase B
SNAP-Capture Magnetic Beads
Trypsin-digested BSA MS Standard (CAM-modified)
Trypsin-ultra™, Mass Spectrometry Grade
Trypsin-ultra™, Mass Spectrometry Grade (Recombinant)
α1-2,3,6 Mannosidase
α1-2,4,6 Fucosidase O
α1-3,4 Fucosidase
α1-3,4,6 Galactosidase
α2-3,6,8 Neuraminidase
α2-3,6,8,9 Neuraminidase A
α-Lytic Protease
α-N-Acetylgalactosaminidase
β-N-Acetylglucosaminidase S

Protein Tools Buffers and Diluents

Blue Protein Loading Dye

Protein Tools

Protein Tools

Cold-Active TEV Protease
NEBExpress® Salt Active Nuclease
NEBExpress® Salt Active Nuclease, GMP Grade
O-Glycoprotease (IMPa)
Ph.D.™-7 Phage Display Peptide Library Kit v2
Ph.D.™-C7C Phage Display Peptide Library Kit v2
Ph.D™.-12 Phage Display Peptide Library Kit v2
Proteinase K, Molecular Biology Grade
Thermolabile Proteinase K

Phage Display

M13KO7 Helper Phage
Ph.D.™ Peptide Display Cloning System
Ph.D.™-12 Phage Display Peptide Library
Ph.D.™-7 Phage Display Peptide Library Kit v2
Ph.D.™-C7C Phage Display Peptide Library Kit v2
Ph.D™.-12 Phage Display Peptide Library Kit v2

Proteases

Cold-Active TEV Protease
Endoproteinase AspN
Endoproteinase GluC
Endoproteinase LysC
Enterokinase, light chain
Factor Xa Protease
Furin
IdeZ Protease (IgG-specific)
O-Glycoprotease (IMPa)
TEV Protease
Trypsin-ultra™, Mass Spectrometry Grade
Trypsin-ultra™, Mass Spectrometry Grade (Recombinant)
α-Lytic Protease

Protein Kinases

cAMP-dependent Protein Kinase (PKA), catalytic subunit
Casein Kinase II (CK2)
Sodium Orthovanadate (Vanadate)

Protein Labeling

Anti-SNAP-tag® Antibody (Polyclonal)
BG-GLA-NHS
BG-Maleimide
BG-PEG-NH2
CLIP-Biotin
CLIP-Cell™ 505
CLIP-Cell™ TMR-Star
CLIP-Surface™ 488
CLIP-Surface™ 547
CLIP-Surface™ 647
IMPACT™ Kit
pCLIPf Vector
pSNAPf Vector
pSNAP-tag® (T7)-2 Vector
SNAP-Biotin®
SNAP-Capture Magnetic Beads
SNAP-Cell® 505-Star
SNAP-Cell® Block
SNAP-Cell® Oregon Green®
SNAP-Cell® TMR-Star
SNAP-Cell® 430
SNAP-Cell® 647-SiR
SNAP-Surface® 488
SNAP-Surface® 549
SNAP-Surface® 594
SNAP-Surface® 649
SNAP-Surface® Alexa Fluor® 488
SNAP-Surface® Alexa Fluor® 546
SNAP-Surface® Alexa Fluor® 647
SNAP-Surface® Block
SNAP-tag® Purified Protein

Protein Standards

Blue Prestained Protein Standard, Broad Range (11-250 kDa)
Blue Protein Loading Dye
Color Prestained Protein Standard, Broad Range (10-250 kDa)
Unstained Protein Standard, Broad Range (10-200 kDa)

Protein Phosphatases

Lambda Protein Phosphatase (Lambda PP)
p-Nitrophenyl Phosphate (PNPP)
Sodium Orthovanadate (Vanadate)

Proteome Analysis

Endo D
Endo F3
Endo H
Endo Hf
Endo S
Endoproteinase AspN
Endoproteinase GluC
Endoproteinase LysC
IdeZ Protease (IgG-specific)
N-Glycopeptide Binding Protein
O-Glycoprotease (IMPa)
O-Glycosidase
PNGase A
PNGase F
PNGase F (Glycerol-free)
PNGase F (Glycerol-free), Recombinant
PNGase F, Recombinant
Protein Deglycosylation Mix II
Rapid™ PNGase F
Rapid™ PNGase F (non-reducing format)
Remove-iT® PNGase F
RNase B
SNAP-Capture Magnetic Beads
Trypsin-digested BSA MS Standard (CAM-modified)
Trypsin-ultra™, Mass Spectrometry Grade
Trypsin-ultra™, Mass Spectrometry Grade (Recombinant)
α1-2,3,6 Mannosidase
α1-2,4,6 Fucosidase O
α1-3,4 Fucosidase
α1-3,4,6 Galactosidase
α2-3,6,8 Neuraminidase
α2-3,6,8,9 Neuraminidase A
α-Lytic Protease
α-N-Acetylgalactosaminidase
β-N-Acetylglucosaminidase S

Protein Tools Buffers and Diluents

Blue Protein Loading Dye